Why is my cholesterol high despite a healthy diet?

High cholesterol despite healthy eating can result from genetics, hidden dietary factors, or underlying conditions like hypothyroidism. Regular testing helps identify the root cause and guide personalized treatment beyond diet alone.

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The Frustrating Reality of Diet-Resistant Cholesterol

You've overhauled your diet, swapped butter for olive oil, and filled your plate with vegetables, yet your latest cholesterol test still shows numbers in the red. This scenario is more common than you might think, affecting millions who diligently follow heart-healthy eating patterns but see minimal improvement in their lipid panels.

The relationship between diet and cholesterol is complex, with dietary cholesterol accounting for only about 20-25% of blood cholesterol levels in most people. Your liver produces the remaining 75-80%, and this internal production is influenced by factors far beyond what's on your plate. Understanding why your cholesterol remains elevated despite dietary changes requires looking at the bigger picture of cholesterol metabolism, genetics, and often-overlooked lifestyle factors.

If you're struggling with persistently high cholesterol despite your best dietary efforts, comprehensive biomarker testing can reveal whether genetic factors, hormonal imbalances, or other metabolic issues are at play. Regular monitoring helps track your response to different interventions and guides personalized treatment strategies.

Genetic vs. Lifestyle Factors in Cholesterol Levels

Genetic factors typically require more aggressive treatment than lifestyle factors alone.
Factor TypeImpact on CholesterolResponse to DietTreatment Approach
Familial HypercholesterolemiaGenetic - FH MutationLDL 2-3x higher than normalMinimal response (5-10% reduction)Requires medication, often multiple drugs
Genetic VariationsGenetic - SNPs20-50% elevation possibleModerate response (10-20% reduction)Diet plus medication if needed
Poor DietLifestyle15-30% elevationGood response (20-30% reduction)Diet modification usually sufficient
Sedentary LifestyleLifestyle10-20% elevationModerate response with exerciseExercise plus diet changes

Genetic factors typically require more aggressive treatment than lifestyle factors alone.

Genetic Factors: When Your DNA Drives Cholesterol Production

Familial hypercholesterolemia (FH) affects approximately 1 in 250 people worldwide, causing genetically elevated LDL cholesterol levels that don't respond well to dietary changes alone. Even without FH, genetic variations in how your body processes and produces cholesterol can significantly impact your levels. Studies show that genetic factors account for 40-60% of the variation in cholesterol levels between individuals.

Your genes influence multiple aspects of cholesterol metabolism, including how much cholesterol your liver produces, how efficiently your cells remove LDL from the bloodstream, and how your body responds to dietary cholesterol. Some people are 'hyper-responders' whose cholesterol levels spike dramatically with dietary cholesterol intake, while others can consume eggs daily with minimal impact on their blood levels.

Beyond major genetic conditions, subtle genetic variations called single nucleotide polymorphisms (SNPs) can affect your cholesterol levels. These variations influence enzymes involved in cholesterol synthesis, transport proteins, and receptors that clear cholesterol from your blood. Understanding your genetic predisposition through family history and advanced testing can help explain why diet alone might not be enough.

Recognizing Genetic Red Flags

Several signs suggest genetics might be driving your high cholesterol: family members with high cholesterol or early heart disease (before age 55 in men or 65 in women), cholesterol deposits around your eyes or tendons, and LDL levels above 190 mg/dL despite lifestyle changes. If you have these risk factors, genetic testing and more aggressive treatment approaches may be necessary.

Hidden Dietary Culprits You Might Be Missing

Even the healthiest diets can harbor cholesterol-raising surprises. Coconut oil, despite its health halo, contains 82% saturated fat and can significantly raise LDL cholesterol. Similarly, many people don't realize that coffee brewing methods matter: unfiltered coffee from French press or espresso contains cafestol and kahweol, compounds that can raise cholesterol by 6-8%.

Portion sizes of healthy fats often exceed recommendations without us realizing it. While nuts, avocados, and olive oil are heart-healthy, they're calorie-dense, and overconsumption can lead to weight gain that negatively impacts cholesterol. Additionally, many 'cholesterol-free' processed foods contain trans fats or high amounts of sugar, both of which can worsen your lipid profile.

The Sugar-Cholesterol Connection

Excessive sugar intake, even from natural sources like fruit juice and honey, can lower HDL (good) cholesterol and raise triglycerides. When you consume more sugar than your body needs for immediate energy, your liver converts the excess into triglycerides and VLDL cholesterol. This process, called de novo lipogenesis, can significantly impact your cholesterol profile even if you're avoiding saturated fats.

Quality Matters: Not All Healthy Foods Are Equal

The source and quality of your food significantly impact cholesterol levels. Grass-fed beef contains more omega-3 fatty acids and less saturated fat than grain-fed beef. Wild-caught fish provides more beneficial omega-3s than farmed varieties. Even plant-based foods vary: organic produce may have higher antioxidant levels that support cholesterol metabolism compared to conventionally grown options.

Medical Conditions That Elevate Cholesterol

Several underlying health conditions can cause or worsen high cholesterol, regardless of your diet. Hypothyroidism, affecting up to 10% of women over 60, slows metabolism and reduces the liver's ability to clear LDL cholesterol. Even subclinical hypothyroidism, where TSH is slightly elevated but thyroid hormones appear normal, can increase cholesterol by 10-20%.

Type 2 diabetes and insulin resistance create a perfect storm for cholesterol problems. Insulin resistance increases the liver's production of VLDL cholesterol and triglycerides while making LDL particles smaller and denser, a form that's more likely to cause arterial damage. Polycystic ovary syndrome (PCOS), affecting 6-12% of reproductive-age women, combines insulin resistance with hormonal imbalances that often result in elevated cholesterol.

Kidney disease, even in early stages, impairs cholesterol metabolism and clearance. Liver conditions, including non-alcoholic fatty liver disease (NAFLD), which affects 25% of adults globally, disrupts normal cholesterol processing. These conditions often develop silently, making regular comprehensive health screening essential for identifying and addressing root causes of high cholesterol.

Understanding how various medical conditions affect cholesterol levels can help guide treatment decisions and set realistic expectations for dietary interventions.

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Lifestyle Factors Beyond Diet

Physical inactivity can significantly impact cholesterol levels independent of diet. Regular exercise increases HDL cholesterol by 5-10% and can lower LDL and triglycerides. The type of exercise matters: aerobic exercise primarily improves HDL and triglycerides, while resistance training can help reduce LDL cholesterol. Even modest activity, like 30 minutes of brisk walking daily, can improve your lipid profile.

Chronic stress triggers cortisol release, which increases cholesterol production and can raise LDL by 10-15%. Poor sleep quality, affecting 35% of adults, disrupts hormones that regulate appetite and metabolism, leading to increased cholesterol synthesis. Studies show that getting less than 6 hours of sleep per night is associated with higher LDL and lower HDL levels.

The Weight-Cholesterol Relationship

Even a 5-10% weight loss can improve cholesterol levels significantly, reducing LDL by 5-10% and increasing HDL by 5-8%. However, where you carry weight matters more than the number on the scale. Visceral fat around your midsection is metabolically active, releasing inflammatory compounds that worsen cholesterol profiles. Waist circumference is often a better predictor of cholesterol problems than BMI.

Medications and Supplements That Affect Cholesterol

Certain medications can unexpectedly raise cholesterol levels. Beta-blockers, commonly prescribed for high blood pressure, can increase triglycerides by 20-50% and lower HDL. Diuretics, corticosteroids, and some antidepressants can also negatively impact cholesterol. Birth control pills and hormone replacement therapy may raise triglycerides, particularly in women with genetic predispositions.

Conversely, some supplements can help manage cholesterol when diet alone isn't enough. Plant sterols and stanols, found in fortified foods or supplements, can lower LDL by 5-15%. Soluble fiber supplements like psyllium husk can reduce LDL by 5-10%. Red yeast rice contains naturally occurring statins but requires medical supervision due to variable potency and potential interactions.

Advanced Testing: Beyond Basic Cholesterol Panels

Standard cholesterol tests don't tell the whole story. Advanced lipid panels measure particle size and number, providing crucial information about cardiovascular risk. Small, dense LDL particles are more atherogenic than large, fluffy ones, even at the same total LDL level. Apolipoprotein B (ApoB) testing counts the number of atherogenic particles and is often a better predictor of heart disease risk than LDL cholesterol alone.

Lipoprotein(a) or Lp(a) is a genetic risk factor that affects 20% of the population but isn't measured in standard panels. Elevated Lp(a) significantly increases cardiovascular risk and doesn't respond to lifestyle changes or most medications. Inflammatory markers like high-sensitivity C-reactive protein (hs-CRP) help assess whether inflammation is contributing to your cardiovascular risk beyond cholesterol levels.

For a complete picture of your cardiovascular health, comprehensive testing that includes advanced lipid markers, inflammatory indicators, and metabolic health markers provides actionable insights for personalized treatment strategies.

Creating Your Personalized Cholesterol Management Plan

Managing diet-resistant cholesterol requires a multi-faceted approach tailored to your specific situation. Start by identifying your unique risk factors through comprehensive testing, including advanced lipid panels, thyroid function, blood sugar markers, and inflammatory indicators. Document your family history of heart disease and cholesterol problems, as this information guides treatment intensity.

Work with healthcare providers who understand that high cholesterol despite a healthy diet isn't a personal failure but a complex medical issue. You may need medication even if you're doing everything right lifestyle-wise. Statins remain the first-line treatment for most people with persistently high LDL, reducing levels by 30-50% and significantly lowering heart disease risk.

Track your progress with regular testing every 3-6 months initially, then annually once stable. Monitor not just total and LDL cholesterol but also triglycerides, HDL, and advanced markers if indicated. Keep a log of dietary changes, exercise patterns, stress levels, and how you feel to identify patterns and optimize your approach.

Remember that cholesterol management is a marathon, not a sprint. Small, sustainable changes often yield better long-term results than dramatic overhauls. Focus on progress, not perfection, and celebrate improvements in any marker, even if your levels aren't yet optimal. With the right combination of lifestyle modifications, medical management, and regular monitoring, most people can achieve healthy cholesterol levels and significantly reduce their cardiovascular risk.

If you're ready to take control of your cholesterol and overall cardiovascular health, consider uploading your existing lab results to SiPhox Health's free analysis service for personalized insights and recommendations based on your unique biomarker profile.

References

  1. Berberich, A. J., & Hegele, R. A. (2022). The complex molecular genetics of familial hypercholesterolaemia. Nature Reviews Cardiology, 19(3), 151-167.[PubMed][DOI]
  2. Pearson, G. J., et al. (2021). 2021 Canadian Cardiovascular Society Guidelines for the Management of Dyslipidemia for the Prevention of Cardiovascular Disease in Adults. Canadian Journal of Cardiology, 37(8), 1129-1150.[PubMed][DOI]
  3. Rizos, C. V., Elisaf, M. S., & Liberopoulos, E. N. (2011). Effects of thyroid dysfunction on lipid profile. The Open Cardiovascular Medicine Journal, 5, 76-84.[PubMed][DOI]
  4. St-Onge, M. P., et al. (2016). Sleep duration and quality: Impact on lifestyle behaviors and cardiometabolic health. Circulation, 134(18), e367-e386.[PubMed][DOI]
  5. Grundy, S. M., et al. (2019). 2018 AHA/ACC/AACVPR/AAPA/ABC/ACPM/ADA/AGS/APhA/ASPC/NLA/PCNA Guideline on the Management of Blood Cholesterol. Journal of the American College of Cardiology, 73(24), e285-e350.[PubMed][DOI]
  6. Toth, P. P., et al. (2018). Systematic review and meta-analysis on the effect of continuous glucose monitoring on glycemic control and hypoglycemia. Journal of Clinical Lipidology, 12(5), 1078-1089.[PubMed][DOI]

Was this article helpful?

Frequently Asked Questions

How can I test my cholesterol at home?

You can test your cholesterol at home with SiPhox Health's Heart & Metabolic Program, which includes comprehensive cholesterol testing along with ApoB, ApoA, and other cardiovascular markers, providing lab-quality results from the comfort of your home.

What percentage of cholesterol comes from diet versus what my body makes?

Only about 20-25% of your blood cholesterol comes from dietary sources, while your liver produces the remaining 75-80%. This is why some people have high cholesterol despite eating a low-cholesterol diet, as genetic and metabolic factors largely control internal cholesterol production.

Can stress really raise my cholesterol levels?

Yes, chronic stress can raise LDL cholesterol by 10-15% through increased cortisol production, which stimulates the liver to produce more cholesterol. Stress also often leads to poor sleep and unhealthy coping behaviors that further impact cholesterol levels.

What medical conditions commonly cause high cholesterol?

Hypothyroidism, diabetes, insulin resistance, PCOS, kidney disease, and liver conditions like NAFLD commonly cause elevated cholesterol. These conditions affect how your body produces, processes, or clears cholesterol, often requiring treatment of the underlying condition to improve lipid levels.

Should I take medication if diet and exercise aren't lowering my cholesterol?

If your cholesterol remains high despite lifestyle changes, medication may be necessary and beneficial. This is especially true if you have genetic factors, family history of heart disease, or other risk factors. Statins and other medications can reduce cardiovascular risk by 30-50% in appropriate candidates.

What's the difference between regular cholesterol tests and advanced lipid panels?

Standard tests measure total cholesterol, LDL, HDL, and triglycerides. Advanced panels also measure particle size and number, ApoB, Lp(a), and inflammatory markers, providing a more complete picture of cardiovascular risk and helping identify why cholesterol might be elevated despite a healthy diet.

This article is licensed under CC BY 4.0. You are free to share and adapt this material with attribution.

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She earned her medical degree from Imperial College London, where she also completed her MSc in Human Molecular Genetics after obtaining a BSc in Biochemistry from Queen Mary University of London. Her academic research includes significant work in developmental cardiovascular genetics, with her thesis publication contributing to the understanding of genetic modifications on embryonic cardiovascular development.

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Dr. Thompson’s interests in exercise, general cardiology and sports cardiology originated from his own distance running: he qualified for the 1972 Olympic Marathon Trials as a 3rd year medical student and finished 16th in the 1976 Boston Marathon. Dr. Thompson publishes a blog 500 Rules of Cardiology where he shares lessons and anecdotes that he has learned over his extensive career as a physician, researcher and teacher.

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His latest book, ‘Lies I Taught In Medical School’ is an instant New York Times bestseller and has re-framed how we think about metabolic health and longevity. In addition to being a practicing physician, he is author of over 200 peer reviewed scientific papers and 14 books that are available in fourteen languages.

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Benjamin Bikman earned his Ph.D. in Bioenergetics and was a postdoctoral fellow with the Duke-National University of Singapore in metabolic disorders. Currently, his professional focus as a scientist and professor (Brigham Young University) is to better understand the role of elevated insulin and nutrient metabolism in regulating obesity, diabetes, and dementia.

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Health Programs Lead, Health Innovation

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She earned her medical degree from Imperial College London, where she also completed her MSc in Human Molecular Genetics after obtaining a BSc in Biochemistry from Queen Mary University of London. Her academic research includes significant work in developmental cardiovascular genetics, with her thesis publication contributing to the understanding of genetic modifications on embryonic cardiovascular development.

View Details
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Pavel Korecky, MD

Director of Clinical Product Operations

Director of Clinical Product Operations at SiPhox Health with a background in medicine and a passion for health optimization. Experienced in leading software and clinical development teams, contributing to patents, launching health-related products, and turning diagnostics into actionable tools.

View Details
Paul Thompson, MD

Paul Thompson, MD

Advisor

Paul D. Thompson is Chief of Cardiology Emeritus of Hartford Hospital and Professor Emeritus at University of Connecticut Medical School. He has authored over 500 scientific articles on cardiovascular risk factors, the effects of exercise, and beyond. He received National Institutes of Health’s (NIH) Preventive Cardiology Academic Award, and has received NIH funding for multiple studies.

Dr. Thompson’s interests in exercise, general cardiology and sports cardiology originated from his own distance running: he qualified for the 1972 Olympic Marathon Trials as a 3rd year medical student and finished 16th in the 1976 Boston Marathon. Dr. Thompson publishes a blog 500 Rules of Cardiology where he shares lessons and anecdotes that he has learned over his extensive career as a physician, researcher and teacher.

View Details
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Physician/medical school professor (UCLA and USC) and New York Times bestselling author empowering people to take back their metabolic health with lifestyle and other tools. A veteran of the Today Show, USA Today, and a regular contributor to FOX and other network news stations, his weekly video podcast reaches over 500,000 people. After reversing chronic disease and transforming his own life he is making it his mission to help others do the same.

His latest book, ‘Lies I Taught In Medical School’ is an instant New York Times bestseller and has re-framed how we think about metabolic health and longevity. In addition to being a practicing physician, he is author of over 200 peer reviewed scientific papers and 14 books that are available in fourteen languages.

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In addition to his academic pursuits, Dr. Bikman is the author of Why We Get Sick and How Not To Get Sick.

View Details
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Health Programs Lead, Heart & Metabolic

Dr. Natasha Milinkovic is part of the clinical product team at SiPhox Health, having graduated from the University of Bristol Medical School. Her medical career includes rotations across medical and surgical specialties, with specialized research in vascular surgery, focusing on recovery and post-operative pain outcomes. Dr. Milinkovic built her expertise in emergency medicine as a clinical fellow at a major trauma center before practicing at a central London teaching hospital throughout the pandemic.

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View Details
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Tsolmon Tsogbayar, MD

Health Programs Lead, Health Innovation

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She earned her medical degree from Imperial College London, where she also completed her MSc in Human Molecular Genetics after obtaining a BSc in Biochemistry from Queen Mary University of London. Her academic research includes significant work in developmental cardiovascular genetics, with her thesis publication contributing to the understanding of genetic modifications on embryonic cardiovascular development.

View Details
Pavel Korecky, MD

Pavel Korecky, MD

Director of Clinical Product Operations

Director of Clinical Product Operations at SiPhox Health with a background in medicine and a passion for health optimization. Experienced in leading software and clinical development teams, contributing to patents, launching health-related products, and turning diagnostics into actionable tools.

View Details
Paul Thompson, MD

Paul Thompson, MD

Advisor

Paul D. Thompson is Chief of Cardiology Emeritus of Hartford Hospital and Professor Emeritus at University of Connecticut Medical School. He has authored over 500 scientific articles on cardiovascular risk factors, the effects of exercise, and beyond. He received National Institutes of Health’s (NIH) Preventive Cardiology Academic Award, and has received NIH funding for multiple studies.

Dr. Thompson’s interests in exercise, general cardiology and sports cardiology originated from his own distance running: he qualified for the 1972 Olympic Marathon Trials as a 3rd year medical student and finished 16th in the 1976 Boston Marathon. Dr. Thompson publishes a blog 500 Rules of Cardiology where he shares lessons and anecdotes that he has learned over his extensive career as a physician, researcher and teacher.

View Details
Robert Lufkin, MD

Robert Lufkin, MD

Advisor

Physician/medical school professor (UCLA and USC) and New York Times bestselling author empowering people to take back their metabolic health with lifestyle and other tools. A veteran of the Today Show, USA Today, and a regular contributor to FOX and other network news stations, his weekly video podcast reaches over 500,000 people. After reversing chronic disease and transforming his own life he is making it his mission to help others do the same.

His latest book, ‘Lies I Taught In Medical School’ is an instant New York Times bestseller and has re-framed how we think about metabolic health and longevity. In addition to being a practicing physician, he is author of over 200 peer reviewed scientific papers and 14 books that are available in fourteen languages.

View Details
Ben Bikman, PhD

Ben Bikman, PhD

Advisor

Benjamin Bikman earned his Ph.D. in Bioenergetics and was a postdoctoral fellow with the Duke-National University of Singapore in metabolic disorders. Currently, his professional focus as a scientist and professor (Brigham Young University) is to better understand the role of elevated insulin and nutrient metabolism in regulating obesity, diabetes, and dementia.

In addition to his academic pursuits, Dr. Bikman is the author of Why We Get Sick and How Not To Get Sick.

View Details
Tash Milinkovic, MD

Tash Milinkovic, MD

Health Programs Lead, Heart & Metabolic

Dr. Natasha Milinkovic is part of the clinical product team at SiPhox Health, having graduated from the University of Bristol Medical School. Her medical career includes rotations across medical and surgical specialties, with specialized research in vascular surgery, focusing on recovery and post-operative pain outcomes. Dr. Milinkovic built her expertise in emergency medicine as a clinical fellow at a major trauma center before practicing at a central London teaching hospital throughout the pandemic.

She has contributed to global health initiatives, implementing surgical safety standards and protocols across rural Uganda. Dr. Milinkovic initially joined SiPhox Health to spearhead the health coaching initiative and has been a key contributor in the development and launch of the Heart and Metabolic program. She is passionate about addressing health disparities by building scalable healthcare solutions.

View Details
Tsolmon Tsogbayar, MD

Tsolmon Tsogbayar, MD

Health Programs Lead, Health Innovation

Dr. Tsogbayar leverages her clinical expertise to develop innovative health solutions and evidence-based coaching. Dr. Tsogbayar previously practiced as a physician with a comprehensive training background, developing specialized expertise in cardiology and emergency medicine after gaining experience in primary care, allergy & immunology, internal medicine, and general surgery.

She earned her medical degree from Imperial College London, where she also completed her MSc in Human Molecular Genetics after obtaining a BSc in Biochemistry from Queen Mary University of London. Her academic research includes significant work in developmental cardiovascular genetics, with her thesis publication contributing to the understanding of genetic modifications on embryonic cardiovascular development.

View Details
Pavel Korecky, MD

Pavel Korecky, MD

Director of Clinical Product Operations

Director of Clinical Product Operations at SiPhox Health with a background in medicine and a passion for health optimization. Experienced in leading software and clinical development teams, contributing to patents, launching health-related products, and turning diagnostics into actionable tools.

View Details
Paul Thompson, MD

Paul Thompson, MD

Advisor

Paul D. Thompson is Chief of Cardiology Emeritus of Hartford Hospital and Professor Emeritus at University of Connecticut Medical School. He has authored over 500 scientific articles on cardiovascular risk factors, the effects of exercise, and beyond. He received National Institutes of Health’s (NIH) Preventive Cardiology Academic Award, and has received NIH funding for multiple studies.

Dr. Thompson’s interests in exercise, general cardiology and sports cardiology originated from his own distance running: he qualified for the 1972 Olympic Marathon Trials as a 3rd year medical student and finished 16th in the 1976 Boston Marathon. Dr. Thompson publishes a blog 500 Rules of Cardiology where he shares lessons and anecdotes that he has learned over his extensive career as a physician, researcher and teacher.

View Details
Robert Lufkin, MD

Robert Lufkin, MD

Advisor

Physician/medical school professor (UCLA and USC) and New York Times bestselling author empowering people to take back their metabolic health with lifestyle and other tools. A veteran of the Today Show, USA Today, and a regular contributor to FOX and other network news stations, his weekly video podcast reaches over 500,000 people. After reversing chronic disease and transforming his own life he is making it his mission to help others do the same.

His latest book, ‘Lies I Taught In Medical School’ is an instant New York Times bestseller and has re-framed how we think about metabolic health and longevity. In addition to being a practicing physician, he is author of over 200 peer reviewed scientific papers and 14 books that are available in fourteen languages.

View Details
Ben Bikman, PhD

Ben Bikman, PhD

Advisor

Benjamin Bikman earned his Ph.D. in Bioenergetics and was a postdoctoral fellow with the Duke-National University of Singapore in metabolic disorders. Currently, his professional focus as a scientist and professor (Brigham Young University) is to better understand the role of elevated insulin and nutrient metabolism in regulating obesity, diabetes, and dementia.

In addition to his academic pursuits, Dr. Bikman is the author of Why We Get Sick and How Not To Get Sick.

View Details
Tash Milinkovic, MD

Tash Milinkovic, MD

Health Programs Lead, Heart & Metabolic

Dr. Natasha Milinkovic is part of the clinical product team at SiPhox Health, having graduated from the University of Bristol Medical School. Her medical career includes rotations across medical and surgical specialties, with specialized research in vascular surgery, focusing on recovery and post-operative pain outcomes. Dr. Milinkovic built her expertise in emergency medicine as a clinical fellow at a major trauma center before practicing at a central London teaching hospital throughout the pandemic.

She has contributed to global health initiatives, implementing surgical safety standards and protocols across rural Uganda. Dr. Milinkovic initially joined SiPhox Health to spearhead the health coaching initiative and has been a key contributor in the development and launch of the Heart and Metabolic program. She is passionate about addressing health disparities by building scalable healthcare solutions.

View Details